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Overfull \hbox (16.05562pt too wide) in paragraph at lines 9--18 \OT1/cmr/m/n/10.95 You will get a hy-com folder that con-tains four sub-fold-er s: HY-COM[]2.2.12 and HY-COM[]2.2.37 and MSCPROGS [] LaTeX Font Info: Try loading font information for OMS+cmr on input line 19. (/usr/local/texlive/2009/texmf-dist/tex/latex/base/omscmr.fd File: omscmr.fd 1999/05/25 v2.5h Standard LaTeX font definitions ) LaTeX Font Info: Font shape `OMS/cmr/m/n' in size <10.95> not available (Font) Font shape `OMS/cmsy/m/n' tried instead on input line 19. Underfull \hbox (badness 10000) in paragraph at lines 34--37 [] [3]) [4] \openout2 = `inputs/model_setup.aux'. (./inputs/model_setup.tex Chapter 3. Package natbib Warning: Citation `wal07' on page 5 undefined on input line 8. 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Underfull \hbox (badness 10000) in paragraph at lines 267--273 [] Underfull \hbox (badness 10000) in paragraph at lines 274--275 [] [9] [10] [11] File: Pics/depth_0051.png Graphic file (type png) File: Pics/depth_0056.png Graphic file (type png) [12 <./Pics/depth_0051.png (PNG copy)> <./Pics/depth_ 0056.png (PNG copy)>] Overfull \hbox (81.33182pt too wide) in paragraph at lines 437--437 [] \OT1/cmtt/m/n/10.95 1 'pefo ld ' = port transport e-folding time in days[] [] Overfull \hbox (81.33182pt too wide) in paragraph at lines 437--437 [] \OT1/cmtt/m/n/10.95 4 'kdpo rt ' = port orientation (1=N, 2=S, 3=E, 4=W)[] [] Overfull \hbox (110.07526pt too wide) in paragraph at lines 437--437 [] \OT1/cmtt/m/n/10.95 222 'ilpo rt ' = last i-index (=ifport for east/west port)[] [] Overfull \hbox (121.57263pt too wide) in paragraph at lines 437--437 [] \OT1/cmtt/m/n/10.95 836 'jlpo rt ' = last j-index (=jfport for north/south port)[] [] Overfull \hbox (156.06476pt too wide) in paragraph at lines 437--437 [] \OT1/cmtt/m/n/10.95 0.0 'svpn ow ' = existing port transport in Sv (+ve towards E or S)[] [] Overfull \hbox (156.06476pt too wide) in paragraph at lines 437--437 [] \OT1/cmtt/m/n/10.95 0.7 'svpo rt ' = target port transport in Sv (+ve towards E or S)[] [] Overfull \hbox (81.33182pt too wide) in paragraph at lines 437--437 [] \OT1/cmtt/m/n/10.95 3 'kdpo rt ' = port orientation (1=N, 2=S, 3=E, 4=W)[] [] Overfull \hbox (110.07526pt too wide) in paragraph at lines 437--437 [] \OT1/cmtt/m/n/10.95 800 'ilpo rt ' = last i-index (=ifport for east/west port)[] [] Overfull \hbox (121.57263pt too wide) in paragraph at lines 437--437 [] \OT1/cmtt/m/n/10.95 30 'jlpo rt ' = last j-index (=jfport for north/south port)[] [] Overfull \hbox (156.06476pt too wide) in paragraph at lines 437--437 [] \OT1/cmtt/m/n/10.95 0.0 'svpn ow ' = existing port transport in Sv (+ve towards E or S)[] [] Overfull \hbox (156.06476pt too wide) in paragraph at lines 437--437 [] \OT1/cmtt/m/n/10.95 0.7 'svpo rt ' = target port transport in Sv (+ve towards E or S)[] [] [13] [14] Overfull \hbox (154.69638pt too wide) in paragraph at lines 506--506 []\OT1/cmtt/m/n/10.95 700 800 1 1 F # Specifies rectangle boundary fla gs (Switches off (F) relaxation in this rectangle grid)[] [] LaTeX Warning: Reference `sec:MSCPROG' on page 15 undefined on input line 508. Package caption Warning: \label before \caption on input line 515. See the caption package documentation for explanation. LaTeX Warning: Reference `fig:rmu' on page 15 undefined on input line 510. File: Pics/relax_rmu.png Graphic file (type png) [15 <./Pics/relax_rmu.png (PNG copy)>] Overfull \hbox (9.7743pt too wide) in paragraph at lines 542--546 []\OT1/cmr/m/n/10.95 Create the hor-i-zon-tally in-ter-po-lated cli-ma-tolo-gie s us-ing the rou-tines \OT1/cmr/bx/n/10.95 bin/z[]levitus.sh \OT1/cmr/m/n/10.95 or \OT1/cmr/bx/n/10.95 bin/z[]phc.sh\OT1/cmr/m/n/10.95 . [] [16] [17] Overfull \hbox (2.81772pt too wide) in paragraph at lines 651--654 []\OT1/cmr/m/n/10.95 The rou-tines that are used to set up the NERSC tidal forc -ing are given in the di-rec-tory \OT1/cmr/bx/n/10.95 tides[]nersc/bin/\OT1/cmr /m/n/10.95 . [] ) [18] \openout2 = `inputs/model_code.aux'. (./inputs/model_code.tex Chapter 4. [19 ] [20] Overfull \hbox (85.46167pt too wide) in paragraph at lines 212--222 \OT1/cmr/m/n/10.95 tro-duced. The mod-i-fied \OT1/cmr/bx/n/10.95 for-fun.F \OT1 /cmr/m/n/10.95 uses pa-ram-e-ters from the FOR-TRAN mod-ule \OT1/cmr/bx/n/10.95 src[]2.2.12/nersc/mod[]forcing[]nersc.F90\OT1/cmr/m/n/10.95 , [] [21] Package natbib Warning: Citation `eve03a' on page 22 undefined on input line 24 0. Overfull \hbox (33.06837pt too wide) in paragraph at lines 238--243 []\OT1/cmr/m/n/10.95 The ran-dom forc-ing is taken care of by the FOR-TRAN mod- ule \OT1/cmr/bx/n/10.95 src[]2.2.12/nersc/mod[]random[]forcing.F90\OT1/cmr/m/n/ 10.95 . [] [22] Missing character: There is no § in font cmr10! Overfull \hbox (20.08716pt too wide) in paragraph at lines 339--398 [][] [] [23]) [24] [25] \openout2 = `inputs/model_running.aux'. (./inputs/model_running.tex [26 ] Chapter 5. Missing character: There is no § in font cmtt10! [27] [28] [29] Overfull \hbox (0.85019pt too wide) in paragraph at lines 113--113 []\OT1/cmtt/m/n/10.95 12 T 6 # lnesti, nestdti - read and apply nesti ng bnd cond at nestdto intervals[] [] Underfull \hbox (badness 10000) in paragraph at lines 166--166 []|\OT1/cmr/bx/n/10.95 Climatology [] [30] [31] Overfull \hbox (6.59888pt too wide) in paragraph at lines 255--255 [] \OT1/cmtt/m/n/10.95 2 'prsflg' = 0 uncorr wind/slp, 1= wind from slp, 2=wind from slp limited by wndspd[] [] [32] Overfull \hbox (29.59363pt too wide) in paragraph at lines 353--353 []\OT1/cmtt/m/n/10.95 21 # Cleanup and move data files to data directory - must be in "expt_XXX" dir for this script[] [] [33] [34] Underfull \hbox (badness 10000) in paragraph at lines 471--474 [] ) [35] \openout2 = `inputs/mscprogs.aux'. (./inputs/mscprogs.tex [36 ] Chapter 6. [37] Underfull \hbox (badness 10000) in paragraph at lines 149--163 [] [38] [39] [40] Overfull \hbox (3.1863pt too wide) in paragraph at lines 314--327 \OT1/cmr/m/n/10.95 which ini-tial-izes the hfile type, based on file-name and f ile-type (file-type can be ei-ther ``restart'', ``nersc[]weekly'', [] Overfull \hbox (7.86821pt too wide) in paragraph at lines 314--327 \OT1/cmr/bx/n/10.95 src/ExtractNC3D/\OT1/cmr/m/n/10.95 . There is also some ad- di-tional info in the header of \OT1/cmr/bx/n/10.95 Ner-sclib/mod[]hycomfile[]i o.F90\OT1/cmr/m/n/10.95 . [] [41] [42] [43] Underfull \hbox (badness 10000) in paragraph at lines 533--536 [] [44] [45] [46] File: Pics/section_init.png Graphic file (type png) File: Pics/section_maskhemi.png Graphic file (type png) File: Pics/section_maskgeodesic.png Graphic file (type png) File: Pics/section_maskfinal.png Graphic file (type png) [47] Missing character: There is no § in font cmr10! [48 <./Pics/section_init.png (PNG copy)> <./Pics/section_maskhemi.png (PNG cop y)> <./Pics/section_maskgeodesic.png (PNG copy)> <./Pics/section_maskfinal.png (PNG copy)>] [49] [50] File: Pics/mercator2.png Graphic file (type png) File: Pics/regular2.png Graphic file (type png) File: Pics/regular2.png Graphic file (type png) File: Pics/native2.png Graphic file (type png) [51] [52 <./Pics/mercator2.png> <./Pics/regular2.png> <. /Pics/native2.png>] [53] [54] [55] Overfull \hbox (4.36237pt too wide) in paragraph at lines 1281--1289 \OT1/cmr/m/n/10.95 pairs. These sec-tion seg-ments will be joined to-gether whe n cal-cu-lat-ing the fi-nal sec-tion for ``FRAM[]STRAIT''. [] Overfull \hbox (33.83955pt too wide) in paragraph at lines 1295--1298 \OT1/cmr/bx/n/10.95 Trans-port file trans-port.in[] \OT1/cmr/m/n/10.95 The tra ns-port spec-i-fi-ca-tion file \OT1/cmr/bx/n/10.95 trans-port.in \OT1/cmr/m/n/1 0.95 is used by the rou-tine \OT1/cmr/bx/n/10.95 m2transport2 [] [56] File: Pics/Convex_polygon_illustration1.png Graphic file (type png) File: Pics/Convex_polygon_illustration2.png Graphic file (type png) [57 <./Pics/Convex_polygon_illustra tion1.png> <./Pics/Convex_polygon_illustration2.png>] [58] File: Pics/hycomvisGUI.png Graphic file (type png) File: Pics/hycomvis_section.png Graphic file (type png) [59 <./Pics/hycomvisGUI.png> <./Pics/hycomvis_s ection.png>] File: Pics/topofix_main.png Graphic file (type png) [60]) [61 <./Pics/topofix_main.png>] \openout2 = `inputs/smorbrod.aux'. (./inputs/smorbrod.tex [62 ] Appendix A. [63] Overfull \hbox (61.63338pt too wide) in paragraph at lines 94--96 []\OT1/cmr/m/n/10.95 If you use the ``old'' cli-ma-tol-ogy when set-ting up for c-ing, you will need to run the scipt \OT1/cmr/bx/n/10.95 re-lax/bin/old[]lev[] nersc.sh [] Overfull \hbox (3.06967pt too wide) in paragraph at lines 115--118 []\OT1/cmr/m/n/10.95 To gen-er-ate river forc-ing files, call the script \OT1/c mr/bx/n/10.95 force/bin/nersc[]trip.sh \OT1/cmr/m/n/10.95 or \OT1/cmr/bx/n/10.9 5 force/bin/nersc[]rivers.sh\OT1/cmr/m/n/10.95 . [] [64] [65]) [66] \openout2 = `inputs/appendixA.aux'. (./inputs/appendixA.tex Appendix B. LaTeX Warning: Reference `fig:grid' on page 67 undefined on input line 11. Package natbib Warning: Citation `ben98' on page 67 undefined on input line 41. [67 ] File: Pics/cm_polesasold.png Graphic file (type png) File: Pics/cm_northpolemoved.png Graphic file (type png) [68 <./Pics/cm_polesasold.png (PNG copy)> <./P ics/cm_northpolemoved.png (PNG copy)>] File: Pics/cmorig.png Graphic file (type png) File: Pics/cm_incr_ew_limits.png Graphic file (type png) File: Pics/cm_incrnx_200_250.png Graphic file (type png) File: Pics/cm_mfac_-2p6_-1p6.png Graphic file (type png) File: Pics/cm_incrny_220_280.png Graphic file (type png) [69 <./Pics/cmorig.png (PNG copy)> <./Pics/cm_ incr_ew_limits.png (PNG copy)> <./Pics/cm_incrnx_200_250.png (PNG copy)> <./Pic s/cm_mfac_-2p6_-1p6.png> <./Pics/cm_incrny_220_280.png (PNG copy)>]) [70] (./repxxx.bbl [71 ]) Package natbib Warning: There were undefined citations. [72] (./repxxx.aux (./inputs/newcomm.aux) (./inputs/intro.aux) (./inputs/model_setup.aux) (./inputs/model_code.aux) (./inputs/model_running.aux) (./inputs/mscprogs.aux) (./inputs/smorbrod.aux) (./inputs/appendixA.aux)) LaTeX Warning: There were undefined references. LaTeX Warning: There were multiply-defined labels. ) Here is how much of TeX's memory you used: 8007 strings out of 493848 118655 string characters out of 3149208 224840 words of memory out of 3000000 10697 multiletter control sequences out of 15000+200000 22518 words of font info for 80 fonts, out of 3000000 for 9000 714 hyphenation exceptions out of 8191 44i,17n,47p,1310b,464s stack positions out of 5000i,500n,10000p,200000b,50000s < /usr/local/texlive/2009/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb> Output written on repxxx.pdf (80 pages, 1737376 bytes). 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