\relax 
\@writefile{toc}{\contentsline {chapter}{\numberline {5}Final model setup and running the model}{27}{chapter.5}}
\@writefile{lof}{\addvspace {10\p@ }}
\@writefile{lot}{\addvspace {10\p@ }}
\newlabel{chp:run}{{5}{27}{Final model setup and running the model\label {chp:run}\relax }{chapter.5}{}}
\@writefile{toc}{\contentsline {section}{\numberline {5.1}Overview of a model run}{27}{section.5.1}}
\newlabel{sec:blkdat}{{5.1.1}{28}{blkdat.input\label {sec:blkdat}\relax }{subsection.5.1.1}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {5.1.1}blkdat.input}{28}{subsection.5.1.1}}
\newlabel{sec:run_EXPT}{{5.1.2}{29}{EXPT.src\label {sec:run_EXPT}\relax }{subsection.5.1.2}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {5.1.2}EXPT.src}{29}{subsection.5.1.2}}
\newlabel{sec:infile.in}{{5.1.3}{30}{infile.in\label {sec:infile.in}\relax }{subsection.5.1.3}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {5.1.3}infile.in}{30}{subsection.5.1.3}}
\@writefile{lot}{\contentsline {table}{\numberline {5.1}{\ignorespaces Synoptic and climatology forcing flags used with NERSC-HYCOM.\relax }}{31}{table.caption.8}}
\newlabel{tab:forcing}{{5.1}{31}{\label {tab:forcing}Synoptic and climatology forcing flags used with NERSC-HYCOM.\relax \relax }{table.caption.8}{}}
\newlabel{sec:infile2.in}{{5.1.4}{31}{infile2.in\label {sec:infile2.in}\relax }{subsection.5.1.4}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {5.1.4}infile2.in}{31}{subsection.5.1.4}}
\newlabel{sec:infile.evp}{{5.1.5}{32}{infile.evp\label {sec:infile.evp}\relax }{subsection.5.1.5}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {5.1.5}infile.evp}{32}{subsection.5.1.5}}
\newlabel{sec:infile_gridp}{{5.1.6}{32}{infile\_gp.in\label {sec:infile_gridp}\relax }{subsection.5.1.6}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {5.1.6}infile\_gp.in}{32}{subsection.5.1.6}}
\newlabel{sec:jobscripts}{{5.1.7}{33}{Pre- and post-processing routines and job scripts\label {sec:jobscripts}\relax }{subsection.5.1.7}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {5.1.7}Pre- and post-processing routines and job scripts}{33}{subsection.5.1.7}}
\@writefile{toc}{\contentsline {section}{\numberline {5.2}Tidbits}{34}{section.5.2}}
\newlabel{sec:run_nestouter}{{5.2.1}{34}{Activating outer nesting\label {sec:run_nestouter}\relax }{subsection.5.2.1}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {5.2.1}Activating outer nesting}{34}{subsection.5.2.1}}
\newlabel{sec:run_nestinner}{{5.2.2}{34}{Activating inner nesting\label {sec:run_nestinner}\relax }{subsection.5.2.2}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {5.2.2}Activating inner nesting}{34}{subsection.5.2.2}}
\newlabel{sec:model_init}{{5.2.3}{34}{Initializing the model from climatology\label {sec:model_init}\relax }{subsection.5.2.3}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {5.2.3}Initializing the model from climatology}{34}{subsection.5.2.3}}
\@writefile{toc}{\contentsline {subsection}{\numberline {5.2.4}Starting the model from a restart file with ``wrong date''}{34}{subsection.5.2.4}}
\@writefile{toc}{\contentsline {subsection}{\numberline {5.2.5}Starting the model from a curviint restart file}{35}{subsection.5.2.5}}
\@writefile{toc}{\contentsline {subsection}{\numberline {5.2.6}Quick access to data and scratch directories}{35}{subsection.5.2.6}}
\@writefile{toc}{\contentsline {section}{\numberline {5.3}Running the model}{35}{section.5.3}}
\@setckpt{inputs/model_running}{
\setcounter{page}{36}
\setcounter{equation}{0}
\setcounter{enumi}{8}
\setcounter{enumii}{0}
\setcounter{enumiii}{0}
\setcounter{enumiv}{0}
\setcounter{footnote}{1}
\setcounter{mpfootnote}{0}
\setcounter{part}{0}
\setcounter{chapter}{5}
\setcounter{section}{3}
\setcounter{subsection}{0}
\setcounter{subsubsection}{0}
\setcounter{paragraph}{0}
\setcounter{subparagraph}{0}
\setcounter{figure}{0}
\setcounter{table}{1}
\setcounter{parentequation}{0}
\setcounter{NAT@ctr}{0}
\setcounter{float@type}{4}
\setcounter{Item}{20}
\setcounter{Hfootnote}{2}
\setcounter{ContinuedFloat}{0}
\setcounter{KVtest}{0}
\setcounter{subfigure}{0}
\setcounter{subfigure@save}{1}
\setcounter{lofdepth}{1}
\setcounter{subtable}{0}
\setcounter{subtable@save}{0}
\setcounter{lotdepth}{1}
\setcounter{section@level}{1}
}